Detailed information of SNP:
|
SNP ID:
sf0118656953(Gbrowse)
Chromosome: chr01 Position: 18656953 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 61.38% | 38.62% |
| All Indica | 792 | 97.47% | 2.53% |
| All Japonica | 492 | 5.08% | 94.92% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 11.96% | 88.04% |
| Japonica Intermediate | 65 | 13.85% | 86.15% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118656953 | A->G | INTERGENIC | None |