Detailed information of SNP:
|
SNP ID:
sf0118678662(Gbrowse)
Chromosome: chr01 Position: 18678662 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1283 | 56.43% | 43.57% |
| All Indica | 675 | 26.37% | 73.63% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 61 | 39.34% | 60.66% |
| Indica I | 305 | 28.52% | 71.48% |
| Indica II | 187 | 20.86% | 79.14% |
| Indica Intermediate | 183 | 28.42% | 71.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118678662 | A->G | INTERGENIC | None |