Detailed information of SNP:
|
SNP ID:
sf0118683308(Gbrowse)
Chromosome: chr01 Position: 18683308 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 97.14% | 2.86% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 477 | 94.76% | 5.24% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 322 | 98.76% | 1.24% |
| Tropical Japonica | 89 | 85.39% | 14.61% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118683308 | G->A | LOC_Os01g33960(LOC_Os01g33960.1) | Synonymous |