Detailed information of SNP:
|
SNP ID:
sf0118742940(Gbrowse)
Chromosome: chr01 Position: 18742940 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 95.28% | 4.72% |
| All Indica | 746 | 91.55% | 8.45% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 342 | 86.26% | 13.74% |
| Indica II | 199 | 98.49% | 1.51% |
| Indica Intermediate | 205 | 93.66% | 6.34% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118742940 | T->C | INTERGENIC | None |