Detailed information of SNP:
|
SNP ID:
sf0118775417(Gbrowse)
Chromosome: chr01 Position: 18775417 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 89.17% | 10.83% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 492 | 73.17% | 26.83% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 332 | 82.83% | 17.17% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 66 | 43.94% | 56.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118775417 | C->T | INTERGENIC | None |