Detailed information of SNP:
|
SNP ID:
sf0118807061(Gbrowse)
Chromosome: chr01 Position: 18807061 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1352 | 95.49% | 4.51% |
| All Indica | 745 | 92.62% | 7.38% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 59 | 96.61% | 3.39% |
| Indica I | 358 | 95.53% | 4.47% |
| Indica II | 192 | 88.54% | 11.46% |
| Indica Intermediate | 195 | 91.28% | 8.72% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118807061 | T->C | LOC_Os01g34140(LOC_Os01g34140.1) | Non-Synonymous SNP |