Detailed information of SNP:
|
SNP ID:
sf0118821340(Gbrowse)
Chromosome: chr01 Position: 18821340 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 88.24% | 11.76% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 492 | 72.36% | 27.64% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 84.43% | 15.57% |
| Tropical Japonica | 92 | 40.22% | 59.78% |
| Japonica Intermediate | 66 | 56.06% | 43.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118821340 | T->G | INTERGENIC | None |