Detailed information of SNP:
|
SNP ID:
sf0118829292(Gbrowse)
Chromosome: chr01 Position: 18829292 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.74% | 49.26% |
| All Indica | 799 | 82.73% | 17.27% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 50.23% | 49.77% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 23.81% | 76.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118829292 | G->A | INTERGENIC | None |