Detailed information of SNP:
|
SNP ID:
sf0118877453(Gbrowse)
Chromosome: chr01 Position: 18877453 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 69.69% | 30.31% |
| All Indica | 780 | 91.28% | 8.72% |
| All Japonica | 497 | 35.41% | 64.59% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 363 | 86.23% | 13.77% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 206 | 96.12% | 3.88% |
| Temperate Japonica | 335 | 17.01% | 82.99% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118877453 | A->G | INTERGENIC | None |