Detailed information of SNP:
|
SNP ID:
sf0118886251(Gbrowse)
Chromosome: chr01 Position: 18886251 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 88.37% | 11.63% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 490 | 73.27% | 26.73% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 333 | 85.89% | 14.11% |
| Tropical Japonica | 91 | 41.76% | 58.24% |
| Japonica Intermediate | 66 | 53.03% | 46.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118886251 | G->A | INTERGENIC | None |