Detailed information of SNP:
|
SNP ID:
sf0118900091(Gbrowse)
Chromosome: chr01 Position: 18900091 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 54.12% | 45.88% |
| All Indica | 779 | 88.45% | 11.55% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 365 | 89.59% | 10.41% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 203 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118900091 | C->T | LOC_Os01g34290(LOC_Os01g34290.1) | Non-Synonymous SNP |