Detailed information of SNP:
|
SNP ID:
sf0118917161(Gbrowse)
Chromosome: chr01 Position: 18917161 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 56.74% | 43.26% |
| All Indica | 774 | 92.89% | 7.11% |
| All Japonica | 495 | 2.02% | 97.98% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 369 | 96.48% | 3.52% |
| Indica II | 200 | 83.50% | 16.50% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118917161 | A->G | INTERGENIC | None |