Detailed information of SNP:
|
SNP ID:
sf0118948470(Gbrowse)
Chromosome: chr01 Position: 18948470 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 54.16% | 45.84% |
| All Indica | 785 | 88.54% | 11.46% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 367 | 89.92% | 10.08% |
| Indica II | 207 | 83.09% | 16.91% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118948470 | A->G | LOC_Os01g34374(LOC_Os01g34374.1) | Non-Synonymous SNP |