Detailed information of SNP:
|
SNP ID:
sf0118949745(Gbrowse)
Chromosome: chr01 Position: 18949745 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1351 | 58.03% | 41.97% |
| All Indica | 736 | 30.30% | 69.70% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 344 | 36.63% | 63.37% |
| Indica II | 202 | 27.72% | 72.28% |
| Indica Intermediate | 190 | 21.58% | 78.42% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118949745 | A->G | LOC_Os01g34374(LOC_Os01g34374.1) | Synonymous |