Detailed information of SNP:
|
SNP ID:
sf0118995548(Gbrowse)
Chromosome: chr01 Position: 18995548 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 71.33% | 28.67% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 494 | 27.73% | 72.27% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 17.42% | 82.58% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118995548 | A->T | INTERGENIC | None |