Detailed information of SNP:
|
SNP ID:
sf0119054872(Gbrowse)
Chromosome: chr01 Position: 19054872 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 64.34% | 35.66% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 482 | 13.28% | 86.72% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 329 | 6.99% | 93.01% |
| Tropical Japonica | 92 | 22.83% | 77.17% |
| Japonica Intermediate | 61 | 32.79% | 67.21% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119054872 | T->A | INTERGENIC | None |