Detailed information of SNP:
|
SNP ID:
sf0119115738(Gbrowse)
Chromosome: chr01 Position: 19115738 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 87.70% | 12.30% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 477 | 65.20% | 34.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 318 | 57.23% | 42.77% |
| Tropical Japonica | 91 | 82.42% | 17.58% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119115738 | T->C | LOC_Os01g34670(LOC_Os01g34670.1) | Non-Synonymous SNP |