Detailed information of SNP:
|
SNP ID:
sf0119127175(Gbrowse)
Chromosome: chr01 Position: 19127175 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 68.09% | 31.91% |
| All Indica | 785 | 43.82% | 56.18% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 16.35% | 83.65% |
| Indica II | 208 | 81.25% | 18.75% |
| Indica Intermediate | 204 | 55.88% | 44.12% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119127175 | G->T | LOC_Os01g34680(LOC_Os01g34680.1) | INTRON |