Detailed information of SNP:
|
SNP ID:
sf0119201823(Gbrowse)
Chromosome: chr01 Position: 19201823 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 69.12% | 30.88% |
| All Indica | 795 | 97.48% | 2.52% |
| All Japonica | 497 | 35.81% | 64.19% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 335 | 46.27% | 53.73% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119201823 | G->A | INTERGENIC | None |