Detailed information of SNP:
|
SNP ID:
sf0119205605(Gbrowse)
Chromosome: chr01 Position: 19205605 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1360 | 89.34% | 10.66% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 447 | 81.21% | 18.79% |
| Aus | 60 | 40.00% | 60.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 287 | 73.52% | 26.48% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119205605 | A->G | INTERGENIC | None |