Detailed information of SNP:
|
SNP ID:
sf0119205662(Gbrowse)
Chromosome: chr01 Position: 19205662 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 69.25% | 30.75% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 497 | 36.22% | 63.78% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 46.27% | 53.73% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119205662 | G->A | INTERGENIC | None |