Detailed information of SNP:
|
SNP ID:
sf0119376784(Gbrowse)
Chromosome: chr01 Position: 19376784 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 70.71% | 29.29% |
| All Indica | 799 | 83.10% | 16.90% |
| All Japonica | 496 | 59.27% | 40.73% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 51.34% | 48.66% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119376784 | T->C | INTERGENIC | None |