Detailed information of SNP:



SNP ID: sf0119376784(Gbrowse)

Chromosome: chr01

Position: 19376784
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 70.71% 29.29%
All Indica799 83.10% 16.90%
All Japonica496 59.27% 40.73%
Aus67 10.45% 89.55%
Indica I375 96.00% 4.00%
Indica II213 60.56% 39.44%
Indica Intermediate211 82.94% 17.06%
Temperate Japonica335 51.34% 48.66%
Tropical Japonica94 79.79% 20.21%
Japonica Intermediate67 70.15% 29.85%
Group VI/Aromatic14 85.71% 14.29%
Intermediate41 60.98% 39.02%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0119376784 T->C INTERGENIC None