Detailed information of SNP:
|
SNP ID:
sf0119387459(Gbrowse)
Chromosome: chr01 Position: 19387459 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 53.64% | 46.36% |
| All Indica | 794 | 50.00% | 50.00% |
| All Japonica | 497 | 62.17% | 37.83% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 373 | 55.76% | 44.24% |
| Indica II | 211 | 27.49% | 72.51% |
| Indica Intermediate | 210 | 62.38% | 37.62% |
| Temperate Japonica | 335 | 51.94% | 48.06% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119387459 | T->C | INTERGENIC | None |