Detailed information of SNP:
|
SNP ID:
sf0119404728(Gbrowse)
Chromosome: chr01 Position: 19404728 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 87.51% | 12.49% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 484 | 71.28% | 28.72% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 89.19% | 10.81% |
| Tropical Japonica | 87 | 22.99% | 77.01% |
| Japonica Intermediate | 64 | 43.75% | 56.25% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119404728 | G->C | INTERGENIC | None |