Detailed information of SNP:
|
SNP ID:
sf0119412660(Gbrowse)
Chromosome: chr01 Position: 19412660 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 57.08% | 42.92% |
| All Indica | 767 | 25.16% | 74.84% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 355 | 10.42% | 89.58% |
| Indica II | 205 | 54.15% | 45.85% |
| Indica Intermediate | 207 | 21.74% | 78.26% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119412660 | T->C | INTERGENIC | None |