Detailed information of SNP:
|
SNP ID:
sf0119413688(Gbrowse)
Chromosome: chr01 Position: 19413688 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 91.22% | 8.78% |
| All Indica | 782 | 84.91% | 15.09% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 92.72% | 7.28% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 202 | 60.89% | 39.11% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119413688 | C->T | INTERGENIC | None |