Detailed information of SNP:
|
SNP ID:
sf0119462974(Gbrowse)
Chromosome: chr01 Position: 19462974 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 54.00% | 46.00% |
| All Indica | 784 | 22.83% | 77.17% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 370 | 8.11% | 91.89% |
| Indica II | 206 | 52.43% | 47.57% |
| Indica Intermediate | 208 | 19.71% | 80.29% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119462974 | T->A | INTERGENIC | None |