Detailed information of SNP:
|
SNP ID:
sf0119475520(Gbrowse)
Chromosome: chr01 Position: 19475520 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 52.26% | 47.74% |
| All Indica | 797 | 18.32% | 81.68% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 7.20% | 92.80% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 209 | 16.75% | 83.25% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119475520 | A->G | LOC_Os01g35184(LOC_Os01g35184.1) | INTRON |
| sf0119475520 | A->G | LOC_Os01g35184(LOC_Os01g35184.2) | INTRON |