Detailed information of SNP:
|
SNP ID:
sf0119551555(Gbrowse)
Chromosome: chr01 Position: 19551555 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 97.04% | 2.96% |
| All Indica | 769 | 95.45% | 4.55% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 364 | 95.05% | 4.95% |
| Indica II | 200 | 93.50% | 6.50% |
| Indica Intermediate | 205 | 98.05% | 1.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119551555 | G->A | INTERGENIC | None |