Detailed information of SNP:



SNP ID: sf0119595575(Gbrowse)

Chromosome: chr01

Position: 19595575
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 97.89% 2.11%
All Indica799 99.87% 0.13%
All Japonica497 94.16% 5.84%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 91.64% 8.36%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0119595575 T->C LOC_Os01g35420(LOC_Os01g35420.1) Synonymous