Detailed information of SNP:
|
SNP ID:
sf0119597394(Gbrowse)
Chromosome: chr01 Position: 19597394 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 62.43% | 37.57% |
| All Indica | 732 | 34.70% | 65.30% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 57 | 70.18% | 29.82% |
| Indica I | 342 | 28.36% | 71.64% |
| Indica II | 193 | 56.48% | 43.52% |
| Indica Intermediate | 197 | 24.37% | 75.63% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119597394 | C->T | INTERGENIC | None |