Detailed information of SNP:
|
SNP ID:
sf0119598068(Gbrowse)
Chromosome: chr01 Position: 19598068 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1321 | 66.54% | 33.46% |
| All Indica | 713 | 40.67% | 59.33% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 60 | 80.00% | 20.00% |
| Indica I | 328 | 33.23% | 66.77% |
| Indica II | 188 | 65.43% | 34.57% |
| Indica Intermediate | 197 | 29.44% | 70.56% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119598068 | T->C | INTERGENIC | None |