Detailed information of SNP:
|
SNP ID:
sf0119642448(Gbrowse)
Chromosome: chr01 Position: 19642448 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 96.17% | 3.83% |
| All Indica | 791 | 94.44% | 5.56% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 369 | 93.77% | 6.23% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119642448 | T->C | INTERGENIC | None |