Detailed information of SNP:
|
SNP ID:
sf0119647444(Gbrowse)
Chromosome: chr01 Position: 19647444 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 78.03% | 21.97% |
| All Indica | 786 | 61.32% | 38.68% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 368 | 54.08% | 45.92% |
| Indica II | 210 | 87.62% | 12.38% |
| Indica Intermediate | 208 | 47.60% | 52.40% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119647444 | C->A | LOC_Os01g35504(LOC_Os01g35504.1) | Non-Synonymous SNP |