Detailed information of SNP:
|
SNP ID:
sf0119649585(Gbrowse)
Chromosome: chr01 Position: 19649585 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 74.14% | 25.86% |
| All Indica | 754 | 54.24% | 45.76% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 345 | 46.96% | 53.04% |
| Indica II | 204 | 79.41% | 20.59% |
| Indica Intermediate | 205 | 41.46% | 58.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119649585 | T->C | LOC_Os01g35504(LOC_Os01g35504.1) | Non-Synonymous SNP |