Detailed information of SNP:
|
SNP ID:
sf0119698343(Gbrowse)
Chromosome: chr01 Position: 19698343 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 65.45% | 34.55% |
| All Indica | 783 | 40.87% | 59.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 367 | 29.70% | 70.30% |
| Indica II | 208 | 71.63% | 28.37% |
| Indica Intermediate | 208 | 29.81% | 70.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119698343 | G->A | INTERGENIC | None |