Detailed information of SNP:
|
SNP ID:
sf0119702710(Gbrowse)
Chromosome: chr01 Position: 19702710 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 96.15% | 3.85% |
| All Indica | 787 | 93.65% | 6.35% |
| All Japonica | 471 | 99.79% | 0.21% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 370 | 100.00% | 0.00% |
| Indica II | 209 | 80.86% | 19.14% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 319 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 98.36% | 1.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119702710 | T->A | LOC_Os01g35600(LOC_Os01g35600.1) | INTRON |