Detailed information of SNP:
|
SNP ID:
sf0119704332(Gbrowse)
Chromosome: chr01 Position: 19704332 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1320 | 88.41% | 11.59% |
| All Indica | 711 | 80.59% | 19.41% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 59 | 84.75% | 15.25% |
| Indica I | 328 | 77.44% | 22.56% |
| Indica II | 195 | 86.67% | 13.33% |
| Indica Intermediate | 188 | 79.79% | 20.21% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119704332 | T->G | INTERGENIC | None |