Detailed information of SNP:
|
SNP ID:
sf0119707168(Gbrowse)
Chromosome: chr01 Position: 19707168 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 55.69% | 44.31% |
| All Indica | 771 | 26.46% | 73.54% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 53.03% | 46.97% |
| Indica I | 360 | 17.78% | 82.22% |
| Indica II | 208 | 45.67% | 54.33% |
| Indica Intermediate | 203 | 22.17% | 77.83% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119707168 | C->G | INTERGENIC | None |