Detailed information of SNP:
|
SNP ID:
sf0119710382(Gbrowse)
Chromosome: chr01 Position: 19710382 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 60.09% | 39.91% |
| All Indica | 763 | 32.11% | 67.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 67.69% | 32.31% |
| Indica I | 358 | 23.18% | 76.82% |
| Indica II | 205 | 50.73% | 49.27% |
| Indica Intermediate | 200 | 29.00% | 71.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119710382 | T->C | INTERGENIC | None |