Detailed information of SNP:
|
SNP ID:
sf0119717711(Gbrowse)
Chromosome: chr01 Position: 19717711 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 57.78% | 42.22% |
| All Indica | 768 | 89.32% | 10.68% |
| All Japonica | 480 | 5.62% | 94.38% |
| Aus | 60 | 81.67% | 18.33% |
| Indica I | 367 | 95.10% | 4.90% |
| Indica II | 200 | 75.50% | 24.50% |
| Indica Intermediate | 201 | 92.54% | 7.46% |
| Temperate Japonica | 327 | 4.28% | 95.72% |
| Tropical Japonica | 89 | 6.74% | 93.26% |
| Japonica Intermediate | 64 | 10.94% | 89.06% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119717711 | A->G | INTERGENIC | None |