Detailed information of SNP:
|
SNP ID:
sf0119731303(Gbrowse)
Chromosome: chr01 Position: 19731303 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 98.72% | 1.28% |
| All Indica | 783 | 97.96% | 2.04% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 98.11% | 1.89% |
| Indica II | 205 | 99.02% | 0.98% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119731303 | C->T | INTERGENIC | None |