Detailed information of SNP:
|
SNP ID:
sf0119737388(Gbrowse)
Chromosome: chr01 Position: 19737388 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 94.40% | 5.60% |
| All Indica | 775 | 91.35% | 8.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 367 | 93.73% | 6.27% |
| Indica II | 206 | 90.29% | 9.71% |
| Indica Intermediate | 202 | 88.12% | 11.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119737388 | C->A | INTERGENIC | None |