Detailed information of SNP:
|
SNP ID:
sf0119796967(Gbrowse)
Chromosome: chr01 Position: 19796967 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 95.07% | 4.93% |
| All Indica | 745 | 91.95% | 8.05% |
| All Japonica | 491 | 99.39% | 0.61% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 340 | 91.18% | 8.82% |
| Indica II | 206 | 91.26% | 8.74% |
| Indica Intermediate | 199 | 93.97% | 6.03% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119796967 | A->C | LOC_Os01g35740(LOC_Os01g35740.1) | Non-Synonymous SNP |