Detailed information of SNP:
|
SNP ID:
sf0119824691(Gbrowse)
Chromosome: chr01 Position: 19824691 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 91.56% | 8.44% |
| All Indica | 761 | 89.36% | 10.64% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 61 | 65.57% | 34.43% |
| Indica I | 354 | 90.11% | 9.89% |
| Indica II | 206 | 92.72% | 7.28% |
| Indica Intermediate | 201 | 84.58% | 15.42% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119824691 | A->T | LOC_Os01g35789(LOC_Os01g35789.1) | UTR_3_PRIME |
| sf0119824691 | A->T | LOC_Os01g35789(LOC_Os01g35789.3) | INTRON |
| sf0119824691 | A->T | LOC_Os01g35789(LOC_Os01g35789.2) | UTR_3_PRIME |