Detailed information of SNP:
|
SNP ID:
sf0119837903(Gbrowse)
Chromosome: chr01 Position: 19837903 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 72.86% | 27.14% |
| All Indica | 784 | 53.70% | 46.30% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 364 | 50.27% | 49.73% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 208 | 38.94% | 61.06% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119837903 | A->C | LOC_Os01g35820(LOC_Os01g35820.1) | Non-Synonymous SNP |