Detailed information of SNP:
|
SNP ID:
sf0119841614(Gbrowse)
Chromosome: chr01 Position: 19841614 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 86.09% | 13.91% |
| All Indica | 775 | 76.00% | 24.00% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 76.54% | 23.46% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 207 | 58.94% | 41.06% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119841614 | T->C | LOC_Os01g35820(LOC_Os01g35820.1) | INTRON |