Detailed information of SNP:
|
SNP ID:
sf0119856880(Gbrowse)
Chromosome: chr01 Position: 19856880 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 73.38% | 26.62% |
| All Indica | 726 | 51.93% | 48.07% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 327 | 40.67% | 59.33% |
| Indica II | 203 | 72.91% | 27.09% |
| Indica Intermediate | 196 | 48.98% | 51.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119856880 | G->A | LOC_Os01g35860(LOC_Os01g35860.1) | Non-Synonymous SNP |