Detailed information of SNP:
|
SNP ID:
sf0119897907(Gbrowse)
Chromosome: chr01 Position: 19897907 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1296 | 74.31% | 25.69% |
| All Indica | 681 | 54.77% | 45.23% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 65.62% | 34.38% |
| Indica I | 326 | 49.08% | 50.92% |
| Indica II | 187 | 63.10% | 36.90% |
| Indica Intermediate | 168 | 56.55% | 43.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119897907 | A->G | LOC_Os01g35960(LOC_Os01g35960.1) | Synonymous |