Detailed information of SNP:
|
SNP ID:
sf0119909372(Gbrowse)
Chromosome: chr01 Position: 19909372 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 52.33% | 47.67% |
| All Indica | 797 | 21.83% | 78.17% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 7.22% | 92.78% |
| Indica II | 213 | 52.58% | 47.42% |
| Indica Intermediate | 210 | 16.67% | 83.33% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119909372 | A->C | INTERGENIC | None |